Coloured dissolved organic matter (CDOM) is one of the major contributors to the absorption budget of most freshwaters and can be used as a proxy to assess non-optical carbon fractions such as dissolved organic carbon (DOC) and the partial pressure of carbon dioxide (pCO2). Nevertheless, riverine studies that explore the former relationships are still relatively scarce, especially within tropical regions. Here we document the spatial-seasonal variability of CDOM, DOC and pCO2, and assess the potential of CDOM absorption coefficient (aCDOM(412)) for estimating DOC concentration and pCO2 along the Lower Amazon River. Our results revealed differences in the dissolved organic matter (DOM) quality between clearwater (CW) tributaries and the Amazon River mainstream. A linear relationship between DOC and CDOM was observed when tributaries and mainstream are evaluated separately (Amazon River: N = 42, R2 = 0.74, p<0.05; CW: N = 13, R2 = 0.57, p<0.05). However, this linear relationship was not observed during periods of higher rainfall and river discharge, requiring a specific model for these time periods to be developed (N = 25, R2 = 0.58, p<0.05). A strong linear positive relation was found between aCDOM(412) and pCO2(N = 69, R2 = 0.65, p<0.05) along the lower river. pCO2 was less affected by the optical difference between tributaries and mainstream waters or by the discharge conditions when compared to CDOM to DOC relationships. Including the river water temperature in the model improves our ability to estimate pCO2 (N = 69; R2 = 0.80, p<0.05). The ability to assess both DOC and pCO2 from CDOM optical properties opens further perspectives on the use of ocean colour remote sensing data for monitoring carbon dynamics in large running water systems worldwide.
The biogeochemical composition of materials suspended and dissolved in estuarine waters is substantially transformed by biological and abiotic processes as water from rivers and subterranean aquifers travels through estuaries to the coastal ocean. These estuarine biogeochemical dynamics directly influence the rate that estuaries sequester, consume, or export carbon, nutrients, and redox-sensitive elements. Biogeochemical signatures in the upper reaches of estuaries (e.g., low salinity) generally reflect characteristics of the rivers and groundwater draining into the estuary. The composition of organic matter (OM) where rivers meet estuaries is a mixture of terrigenous signatures dependent on watershed landscape features, aquatic signatures dependent on the prominence of freshwater primary productivity, and intermediate metabolites (i.e., byproducts of in situ transformation) of these terrigenous and aquatic OM sources. The prominence of aquatic primary production-derived OM and products of microbial decomposition generally increases towards the lower reaches of estuaries where they meet the coastal ocean (i.e., continental shelf). The nature of biogeochemical transformations occurring along estuarine gradients is closely coupled with factors that are poised to change under multiple compounding disturbances and stress factors related to both climate change and other anthropogenic global changes. This chapter describes the fundamental mechanisms that drive the transport, transformation, and storage of OM in estuaries and how these dynamics have and may continue to change in response to key disturbances and stressors related to climate change and other anthropogenic global changes including warming, intensifying hydrological extremes (e.g., droughts and floods), sea-level rise, and acidification.